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Home » Archives for Kayla Lang » Page 10
Author: Kayla Lang

Scientists Catch a Glimpse of Elusive Cell Membrane Nanodomains

August 4, 2020 by Kayla Lang

A collaborative team including University of Tennessee researchers has captured the first direct images of tiny cell membrane domains known as lipid rafts. The images were published in a research article in this week’s edition of Proceedings of the National Academy of Sciences of the USA.

First hypothesized over thirty years ago, rafts are specialized microenvironments found within cell membranes, the sheets of lipid and protein that both surround a cell and delineate its internal compartments. They are thought to play a crucial role in the way cells transport materials and communicate with each other. Some viruses, including influenza and HIV, have even co-opted rafts in their life cycle.

At nearly a thousand times smaller than the width of a human hair, rafts are impossible to detect with conventional microscopy. “Although their existence is well supported by biochemical evidence, the lack of direct visual observations of rafts has led to some healthy skepticism” said Fred Heberle, an assistant professor in the Chemistry Department at UT and lead author of the study.

The researchers used a powerful technique called cryogenic electron microscopy (cryoEM) to take the first pictures of the tiny structures. “An ordinary light microscope can’t resolve objects smaller than a few tenths of a micrometer, but cryoEM can visualize structures as small as a tenth of a nanometer” said Heberle. “It’s revolutionizing the field of structural biology, but to date has mostly been used to look at protein structure. We decided to zoom in on membranes and see if we could visualize rafts.”

The study grew out of a collaboration between Heberle and two research groups at the University of Texas Health Science Center at Houston led by cell biologist Ilya Levental and neurobiologist M. Neal Waxham. “We have a common interest in membrane structure but different ways of approaching it,” said Heberle. “My lab studies synthetic membranes, while Ilya and Neal specialize in more complicated biological membranes. We also have combined expertise in small-angle scattering, molecular simulations, and electron microscopy. Ultimately, we needed all of those tools to convince ourselves that we were really seeing rafts.”

The researchers first imaged model biomimetic membranes to show that cryoEM can resolve sub-nanometer differences in their thickness, a feature known to distinguish rafts from the surrounding membrane. They then used simulations to predict how rafts would appear in a cryoEM image and to fine-tune their analysis, before finally capturing images of raft domains in both biomimetic and biological membrane preparations. A team at the University of Washington led by Sarah Keller and graduate student Caitlin Cornell independently made a similar discovery using a variation of cryoEM called cryo-electron tomography, and the two articles were published together.

While the new images should settle some long-standing questions, many aspects of raft formation and structure remain poorly understood. At a basic level, rafts are a consequence of the immiscibility of different lipids found in cell membranes, much like a mixture of olive oil and vinegar will separate in a bottle of salad dressing. “Cell membranes are fluid mixtures of lipids and proteins, and some of the different types of lipids don’t mix well and can separate to form a raft,” Heberle said.

One problem that has confounded researchers is why rafts remain small rather than coalescing into larger structures, but Heberle says that the ability to finally visualize the domains may eventually provide answers. “A better understanding of rafts will not only give insights into the normal functioning of our own cells, but may also lead to improved therapies for viral infections.”

Learn More

Filed Under: Artsci, News

Hazari Online

August 3, 2020 by Kayla Lang

Dr. Al Hazari Magic ShowAl Hazari, retired UT professor, has been conducting experiments on Zoom to teach and inspire chemistry enthusiasts.

“I have always enjoyed teaching and sharing something of myself and my knowledge with anyone ages 2 to 102,” Hazari said. “What we’re really after are science-literate citizens. Everyone should know about science, be comfortable with science, and never stop being curious and inquisitive about the wonders of science.”

This summer, Hazari has utilized the Zoom platform to teach Forensic Chemistry Camp for middle school students, ORAU workshops, the Harriman Public Library Chemistry Magic Show, and local WBIR presentations. 

Hazari WBIR 1

Hazari WBIR 2

Hazari WBIR 3

Filed Under: Artsci, News, Uncategorized

Larese Named ACS Fellow

July 27, 2020 by Kayla Lang

John Larese, professor in the Department of Chemistry, has been named an 2020 ACS Fellow.

The primary purpose of the ACS Fellows Program is to recognize and honor members of the American Chemical Society for their outstanding achievements in and contributions to the science and the profession and for their equally exemplary service to the Society.

“I have truly benefited by my service to ACS and LSAC and by all of the great individuals who have contributed to my scientific endeavors and career,” Larese said. “I’m especially proud of my effort in leading the science/design/funding case for the VISION Spectrometer at the SNS and the training of future scientists in the use of neutrons and novel materials. Clearly without the support and patience of my wife Maryann and children such pursuits are impossible.”

Learn More

Filed Under: Artsci, News

Mourning the Passing of Ffrancon Williams

July 25, 2020 by Kayla Lang

Thomas Ffrancon Williams was born on January 30, 1928, and passed away on July 18, 2020.

Williams received his BSc degree from University College London in 1949, and an external Ph.D. degree from the University of London in 1960. He was employed at the Atomic Energy Research Establishment, Harwell, United Kingdom from 1949 to 1961 except for a leave of absence as a research and teaching associate at Northwestern University from 1957 to 1959. In 1961 he joined the chemistry faculty at the University of Tennessee, Knoxville.

“Francon was a dedicated teacher and outstanding experimental physical chemist,” said Jeffery Kovac, chemistry emeritus professor. “He was an ESR spectroscopist who studied radicals produced by gamma radiation.  Ffrancon did some groundbreaking work on cationic polymerization,” 

Williams was a National Science Foundation Visiting Scientist to Kyoto University, Japan from 1965 to 1966 and was the recipient of a Guggenheim Fellowship in 1972. He has been chairman of the Gordon Research Conferences on Radiation Chemistry (1971) and Radical Ions (1984), and served as an associate and consultant editor of Radiation Research, the official journal of the Radiation Research Society, from 1994 to 1999.

“He was always so kind and nice to me. Our respect went both ways. I will surely miss him, his kind words and phone calls,” said Pam Roach, chemistry staff.

“Ffrancon was a devoted member of our chemistry faculty for many years, and had a wonderful, calm and knowledgeable manner about him,” said Don Esidenberg, development director. “He will surely be missed. Gratefully, he will be remembered by future generations through the Ffrancon Williams Faculty Award in Chemistry Endowment.”

Filed Under: Uncategorized

Campagna Group Published in Environmental Microbiology

July 15, 2020 by Kayla Lang

The Campagna Group has published a collaborative piece titled “Nitrogen flux into metabolites and microcystins changes in response to different nitrogen sources in Microcystis aeruginosa NIES-843” in Environmental Biology. 

The over-enrichment of nitrogen (N) in the environment has contributed to severe and recurring harmful cyanobacterial blooms, especially by the non-N2 -fixing Microcystis spp. N chemical speciation influences cyanobacterial growth, persistence and the production of the hepatotoxin microcystin, but the physiological mechanisms to explain these observations remain unresolved.

Stable-labelled isotopes and metabolomics were employed to address the influence of nitrate, ammonium, and urea on cellular physiology and production of microcystins in Microcystis aeruginosa NIES-843. Global metabolic changes were driven by both N speciation and diel cycling. Tracing 15 N-labelled nitrate, ammonium, and urea through the metabolome revealed N uptake, regardless of species, was linked to C assimilation.

The production of amino acids, like arginine, and other N-rich compounds corresponded with greater turnover of microcystins in cells grown on urea compared to nitrate and ammonium. However, 15 N was incorporated into microcystins from all N sources. The differences in N flux were attributed to the energetic efficiency of growth on each N source.

While N in general plays an important role in sustaining biomass, these data show that N-speciation induces physiological changes that culminate in differences in global metabolism, cellular microcystin quotas and congener composition.

 

Filed Under: Organic Chemistry, Uncategorized

Honors Day 2020

July 1, 2020 by Kayla Lang

Department of Chemistry recognized the achievements among students, faculty and staff members of the department. Below, you will find a complete list of recipients for the Honors Day 2020.

UNDERGRADUATE AWARDS

ACS-Hach Land Grant ScholarshipNatalie Parsons
CRC Press General Chemistry AwardKara Holt
C.W. Keenan Outstanding General Chemistry Student AwardMarissa Knofczynski
Department of Chemistry ScholarshipsMaggie Eslinger, Elizabeth Lander and Sean Weiland
Dr. Lucy E. Scroggie ScholarshipGhaeath Abbas
Halbert and Anne Carmichael ScholarshipElijah Hix and Thaddeus Puzdrakiewicz
C.A. Buehler Chemistry ScholarshipNicholas Legaux and Kristopher Reynolds
Melaven-Rhenium ScholarshipsCatherine Armstrong, Nicholas Legaux and Clayton West

GRADUATE AWARDS

Keenan Teaching AwardAmber Gray
Outstanding Teaching AwardAlexandria Bone
Second Year Candidacy AwardAlexandria Bone
Gleb Mamantov Graduate Chemistry ScholarJacob Townsend
Jerome Eastham Fellowship in Organic ChemistryJinchao Lou
Eugene John Barber Fellowship in Physical ChemistryKevin Smith
Burchfield Burridge Warner Fellowship in Polymer ChemistryBishnu Prasad Thapaliya

STUDENT RECOGNITIONS

Goldwater ScholarshipKristopher Reynolds
Winners of the Board of Visitor’s Poster CompetitionJinchao Lou and Brandon Colon

STAFF AWARDS

Outstanding Service AwardPam Roach and Linda Sherman
Carol Moulton ACGS Service AwardLinda C. Sherman
James F. Green ACGS Service AwardNoah Hathcock

FACULTY AWARDS

Ziegler ProfessorshipDavid Jenkins
T. Ffrancon Williams ProfessorshipKonstantinos Vogiatzis
Gleb Mamantov Professorship in ChemistryBrian Long
2020 Max Bredig AwardSheng Dai

FACULTY RECOGNITION

New FacultyFred Heberle
RetiringCharles Feigerle

Filed Under: Uncategorized

Vogiatzis Lab Published in Nature Communications

June 29, 2020 by Kayla Lang

Machine learning applications for chemical problems have been rapidly increasing. Their popularity is justified since they have led to the discovery of new molecules and materials with enhanced properties, new reactions, or have contributed to the reduction of computational effort needed of complex calculations and simulations.

The Vogiatzis Lab seeks to address how a computational algorithm can efficiently “read” and “learn” patterns from molecular structures in their research “Representation of molecular structures with persistent homology for machine learning applications in chemistry” recently published in Nature Communications.

In this collaborative work between Jacob Townsend, John Hymel and Konstantinos Vogiatzis (Chemistry, University of Tennessee) and Cassie Micucci and Vasileios Maroulas (Mathematics, University of Tennessee), the group is presenting a novel molecular representation method based on persistent homology, an applied branch of topology, which encodes the atomistic structure of molecules.

A molecule is mapped into a persistence diagram, a two-dimensional point summary, which demystifies the connected components and the empty space that exist in a molecule based on the atom types and the distances among them. A persistence diagram is further vectorized to a persistence image (PI), a weighted representation of the diagram, which captures the chemically driven uncertainty. The PI in that sense is a “molecular fingerprint”, and when used with machine learning, offers an efficient and reliable approach to screen large molecular databases when compared to other popular molecular representation schemes.

The efficiency arises from the low computation effort needed to compare a large number of fingerprints, and the similar-size representations that are generated, independently of the molecular sizes.

The group demonstrates the applicability of the PI method by screening a large molecular database (GDB-9) with 133,885 organic molecules. Their target was to identify novel molecular units that selectively interact with CO2 and can be used as building blocks of materials, such as polymeric membranes.

They began their study by computing with density functional theory (DFT) the CO2 interaction energies of 100 organic molecules. “Since the initial, limited 100 data points were not capturing the diversity of the GDB-9 database, we applied a technique called active learning in order to incrementally obtain data which helped us efficiently screen the 133,885 molecules,” Vogiatzis said. “We found out that the combination of PIs with active learning performed well with data (interaction energies) from only 220 molecules in order to identify new molecules with stronger CO2 binding.”

Their data-driven methodology was able to identify molecular patterns previously unknown to us that increase the CO2 affinity of organic molecules.

Filed Under: Artsci, News, Vogiatzis

Volunteers in Action

June 19, 2020 by Kayla Lang

Filed Under: Uncategorized

US Department of Energy Awards $20 Million to New Oak Ridge Institute at the University of Tennessee

June 19, 2020 by Kayla Lang

Filed Under: Artsci, News

Two Journal Covers from the Sokolov Group

June 15, 2020 by Kayla Lang

The Sokolov Group’s primary focus of research on dynamics of soft materials, including dynamics of biological macromolecules, and nano-composite materials.

Their recent publication “Correlation between the temperature evolution of the interfacial region and the growing dynamic cooperativity length scale” was featured on cover of The Journal of Chemical Physics. They presented an analyses that revealed a clear correlation between the temperature dependence of the characteristic relaxation time, ln(τα(T)/τ0), and the interfacial layer thickness, Lint(T), in nanocomposite materials.

The group also published their work “Perspectives for Polymer Electrolytes: A View from Fundamentals of Ionic Conductivity” which was on the cover of Macromolecules. This research analyzes fundamental mechanisms controlling ionic conductivity and suggests design of novel polymer electrolytes with enhanced conductivity.

Filed Under: Artsci, News, Polymer Chemistry, Sokolov

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